Hi, Congrats on this special milestone in your son's education! It can definitely be difficult to send one's only child off to school for the first time (a source of anxiety for many parents); with religion as one additional source of worry (whether because we fear or know that our child will be taught to worship a particular religious doctrine we don't believe in, or conversely, that we fear or know our child will not be exposed enough to our religious beliefs).
In your case, seeking a separation of church and state in the classroom, here is another similar JustAsk Q&A with insights from a licensed social worker you might also review:
http://www.education.com/question/parents-professionals-suggest-dealing-teacher/ There are additional answers on that page from other parents, as well as extensive info from the asking parent regarding her concerns about Jesus curriculum being mandated to her Jewish son.
Consider also talking to the school's principal about your concerns to work out an educational alternative that meets state standards without compromising your family's religious beliefs. I would do this proactively, before school starts (if possible) and before an issue arises with a specific teacher. This conversation could also help the school in assigning your son to teachers that are a better fit for your family.
Below are some additional resources you may also find helpful:
Public Schools and Religion: What Parents Need to Know
http://www.education.com/magazine/article/religion-in-schools/
The Parent's Guide to Kindergarten
http://www.education.com/grade/kindergarten/
Building Positive Relationships with Educators
http://www.education.com/topic/parent-teacher-relationship/
Childhood Immunizations and Vaccinations
http://www.education.com/special-edition/childhood-immunizations-vaccinations/
Homeschool
http://www.education.com/topic/homeschool-overview/
K12 - Online Public and Private Schools
http://www.k12.com/
Good luck -- I hope all goes well in your son's first and subsequent years of school.